WCLUSTAG is an advanced tag SNP selection program developed from Ao's algorithms (2005). It allows users to specify different R2 thresholds for SNPs of variable degrees of interest. Downloadable version is available here. Citation can refer to P. C. Sham et al., Bioinformatics 23, 129 (Jan 1, 2007).
 
 
Custom input files (See help) can be submitted here to run the program online. The MAP and PED files are obligatory, while the others are optional. Results (See help) will be sent to the email address provided.

Note For duplicated markers, the one with the highest genotype call rate will be selected for calculation.
MAP file
PED file
Forced selection file
Forced non-selection file
SNP-specific threshold file
Default threshold for SNPs (between 0 and 1)
MAF cut-off (between 0 and 0.5)
Max inter-SNP distance kbp
Email address

Should you have any comments, please contact us at pcsham@hku.hk
Copyright © 2006-2010 Pak Sham. All rights reserved