The List of Phylip programs with web interfaces are shown with the hyperlink as follows. For programs with no web interface, please run them with command line.

Web interfaces description
clique Finds largest clique of mutually compatible characters.
consense Computes majority-rule and strict consensus trees.
contml Phylogenies from maximum likelihood on gene frequency data.
contrast Computes contrasts and correlations for comparative method studies.
dnacomp Phylogenies from DNA by the Compatibility criterion.
dnadist Computes four distance measures from nucleic acid sequences.
dnainvar Phylogenetic invariants method.
dnaml Phylogenies from DNA by maximum likelihood.
dnamlk Phylogenies from DNA by maximum likelihood with a molecular clock.
dnamove Interactive DNA phylogenies by parsimony or compatibility.
dnapars Nucleotide phylogenies by parsimony methods.
dnapenny DNA phylogenies by branch-and-bound.
dollop Phylogenies from the Dollo or polymorphism parsimony criteria.
dolmove Interactive construction of phylogenies using the Dollo or polymorphism parsimony criteria.
dolpenny Branch-and-bound phylogenies from the Dollo or polymorphism parsimony criteria.
drawgram Draws cladograms and phenograms.
drawtree Draws unrooted phylogenies.
factor Recodes multistate data to two state data.
fitch Phylogenies by the Fitch-Margoliash and least-squares methods.
gendist Computes three genetic distances from gene frequency data.
kitsch Phylogenies by the Fitch-Margoliash and least-squares methods with a molecular clock.
mix Wagner, Camin-Sokal and mixed parsimony methods.
move Interactive construction of phylogenies from two-state data.
neighbor Neighbour-joining and UPGMA methods.
penny Finds all most parsimonious trees by branch-and-bound.
protdist Compute distance measures from protein sequences.
protpars Phylogenies by protein parsimony.
restml Phylogenies by maximum likelihood from restriction enzyme data.
retree Reroot, flip branches and change species names and branch lengths.
seqboot Bootstrap, jack-knife or permutation resampling analyses.